PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29913_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 323aa    MW: 36586.4 Da    PI: 6.1813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29913_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12145191455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  h ++Er+RR+++ ++f  L  l+P +     kK +Ka++L  A++Y+k+Lq
  Cotton_A_29913_BGI-A2_v1.0 145 DHVIAERKRREKLSQRFISLSALIPGL-----KKTDKASVLGDAIKYMKQLQ 191
                                 6999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10145191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-17145204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.25E-12146195No hitNo description
SuperFamilySSF474596.41E-16146205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEIVSNKWIS EVETVEDPTF FPQFAIPNMD YSFDDTNFQS FSSESYSSYP NINNGSSNIQ  60
AFHQVVDDNE FKRPMKQLKT DNNWNFSINE NIPPPPPPKA SSSSSPSSHI ISFHNSNPSP  120
AVSQQYYEVT KKVGSMTRTP LHAQDHVIAE RKRREKLSQR FISLSALIPG LKKTDKASVL  180
GDAIKYMKQL QEKVATLEEQ AAKKATESMI FVKKTQIYAD DETSSSDENF DSNQTNNKLF  240
PEIEARVSDK DVLIRIHCEK NKGFISNIMN EVEKLHLCVL NTNVLPFGQA TLDITIVAQM  300
EAEFSMTVKD LVKSLRLALL KFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154ERKRRE
2150155RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6152070.0JX615207.1 Gossypium hirsutum clone NBRI_GE59073 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469707.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0D2QMR80.0A0A0D2QMR8_G
STRINGVIT_07s0205g00190.t014e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-67bHLH family protein